Kerian ThuillierPhD Student, CNRS Dyliss team, Irisa / Inria Rennes-Bretagne Atlantique, Email: kerian.thuillier{at}irisa.fr |
PhD
Supervisors: Anne Siegel (Dyliss / IRISA, Rennes) and Loïc Paulevé (LaBRI, Bordeau)
PhD subject: Scalable inference of Boolean rules controlling hybrid models of multi-layer biological systems
Keywords: Boolean network, hybrid system, answer set programming, linear programming, system biology
Publications
- Thuillier K., Baroukh C., Bockmayr A., Cottret L., Paulevé L., Siegel A. (2021) Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. In: Cinquemani E., Paulevé L. (eds) Computational Methods in Systems Biology. CMSB 2021. Lecture Notes in Computer Science, vol 12881. Springer, Cham. https://doi.org/10.1007/978-3-030-85633-5_10
- Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel, MERRIN: MEtabolic regulation rule INference from time series data, Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii127–ii133, https://doi.org/10.1093/bioinformatics/btac479
Teaching
- (2021-2022): Algorithms (TD), Licence 3, ENS Rennes
- Supervisor: François Schwarzentruber
- (2021-2022): Logique (TD), Licence 3, ISTIC – Univ. Rennes 1
- Supervisor: Sophie Pinchinat
- (2021-2022): Modélisation et Algorithmies des Graphes (TD), Licence 3, ISTIC – Univ. Rennes 1
- Supervisor: Rumen Andonov
- (2021-2022): Recherche Opérationnelle (TP), Master 1, ISTIC – Univ. Rennes 1
- Supervisor: Rumen Andonov
Others
- Organisation of the DKM department‘s seminars